☰ Navigation Tabs
Structure of CAE31940 from Bordetella bronchiseptica RB50
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 293 0.2M NH4Acetate, 0.1M t-Na Citrate pH5.6, 30% PEG 4K, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.19 43.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.913 α = 90 b = 65.026 β = 90 c = 160.689 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Mirrors 2010-11-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 97.4 0.083 0.083 30.7 7.8 42946 42946 -3 31.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.03 78.6 0.71 0.71 2.2 6.4 1723
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 50 40683 40683 2168 97.44 0.19047 0.19047 0.18834 0.23115 0.2222 RANDOM 48.537
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.45 4.52 -5.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.113 r_dihedral_angle_3_deg 14.538 r_dihedral_angle_4_deg 12.99 r_dihedral_angle_1_deg 5.492 r_scangle_it 3.534 r_scbond_it 2.39 r_angle_refined_deg 1.619 r_mcangle_it 1.257 r_angle_other_deg 0.967 r_mcbond_it 0.733
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.113 r_dihedral_angle_3_deg 14.538 r_dihedral_angle_4_deg 12.99 r_dihedral_angle_1_deg 5.492 r_scangle_it 3.534 r_scbond_it 2.39 r_angle_refined_deg 1.619 r_mcangle_it 1.257 r_angle_other_deg 0.967 r_mcbond_it 0.733 r_mcbond_other 0.199 r_chiral_restr 0.088 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4652 Nucleic Acid Atoms Solvent Atoms 223 Heterogen Atoms 26
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 phasing SHELXE model building MLPHARE phasing DM model building CCP4 model building REFMAC refinement Coot model building HKL-3000 data reduction HKL-3000 data scaling DM phasing CCP4 phasing