X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3QMVPDB ENTRY 3QMV

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP729320% PEG3350, 0.22 M sodium chloride, 2 mM DTT, 0.1 M HEPES, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2545.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 155.545α = 90
b = 45.013β = 109.49
c = 156.403γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 300 mm plate2009-10-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-DAPS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.55093.50.10111.022.83574033414
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.5983.70.3592.72.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3QMV2.550357403341416210.217980.214460.28436RANDOM37.475
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.92-0.112.91-2.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.344
r_dihedral_angle_4_deg16.292
r_dihedral_angle_3_deg15.353
r_dihedral_angle_1_deg5.598
r_angle_other_deg4.006
r_scangle_it2.299
r_scbond_it1.325
r_angle_refined_deg1.201
r_mcangle_it1.092
r_mcbond_it0.572
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.344
r_dihedral_angle_4_deg16.292
r_dihedral_angle_3_deg15.353
r_dihedral_angle_1_deg5.598
r_angle_other_deg4.006
r_scangle_it2.299
r_scbond_it1.325
r_angle_refined_deg1.201
r_mcangle_it1.092
r_mcbond_it0.572
r_chiral_restr0.073
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_gen_planes_other0.005
r_bond_other_d
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7692
Nucleic Acid Atoms
Solvent Atoms151
Heterogen Atoms13

Software

Software
Software NamePurpose
Blu-Icedata collection
PHASERphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling