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RedJ-Thioesterase from the Prodiginine biosynthetic pathway in Streptomyces coelicolor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 293 12% PEG2000, 0.7 M sodium chloride, 2 mM DTT, 0.1 M HEPES, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.07 40.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.813 α = 90 b = 79.399 β = 90.12 c = 87.438 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate 2009-08-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 50 100 0.089 22.12 7.7 57967 57954
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.12 2.2 99.9 0.42 5.2 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.12 50 57967 57954 2945 0.20307 0.20054 0.2027 0.24938 0.2483 RANDOM 26.212
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.1 -0.75 -1.97 3.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.361 r_dihedral_angle_4_deg 14.997 r_dihedral_angle_3_deg 13.468 r_dihedral_angle_1_deg 5.387 r_angle_other_deg 4.027 r_scangle_it 2.762 r_scbond_it 1.67 r_mcangle_it 1.271 r_angle_refined_deg 1.241 r_mcbond_it 0.678
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.361 r_dihedral_angle_4_deg 14.997 r_dihedral_angle_3_deg 13.468 r_dihedral_angle_1_deg 5.387 r_angle_other_deg 4.027 r_scangle_it 2.762 r_scbond_it 1.67 r_mcangle_it 1.271 r_angle_refined_deg 1.241 r_mcbond_it 0.678 r_chiral_restr 0.075 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8088 Nucleic Acid Atoms Solvent Atoms 452 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling