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Crystal structure of Symerythrin from Cyanophora paradoxa, reduced with dithionite
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 5.5 279 PEG3350, NH4Cl, BisTris, dithionite, pH 5.5, hanging drop, temperature 279K
Crystal Properties Matthews coefficient Solvent content 2.23 44.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.499 α = 90 b = 81.499 β = 90 c = 46.341 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC Q315R 2010-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.976 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 30.6 100 0.101 0.101 15 11.9 95243 95243 11
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.31 100 0.405 0.405 5.4 10.4 13875
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.25 26.68 95243 95216 4767 99.99 0.116 0.116 0.1147 0.1244 0.1414 0.1472 RANDOM 16.7486
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 -0.36 -0.73 1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.233 r_sphericity_free 17.935 r_dihedral_angle_4_deg 17.556 r_dihedral_angle_3_deg 14.146 r_sphericity_bonded 10.279 r_scangle_it 8.041 r_scbond_it 5.716 r_dihedral_angle_1_deg 5.504 r_mcangle_it 3.815 r_rigid_bond_restr 2.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.233 r_sphericity_free 17.935 r_dihedral_angle_4_deg 17.556 r_dihedral_angle_3_deg 14.146 r_sphericity_bonded 10.279 r_scangle_it 8.041 r_scbond_it 5.716 r_dihedral_angle_1_deg 5.504 r_mcangle_it 3.815 r_rigid_bond_restr 2.86 r_angle_refined_deg 2.837 r_mcbond_it 2.81 r_mcbond_other 1.651 r_angle_other_deg 1.358 r_chiral_restr 0.171 r_bond_refined_d 0.022 r_gen_planes_refined 0.015 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2764 Nucleic Acid Atoms Solvent Atoms 555 Heterogen Atoms 6
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction PHENIX phasing