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Mouse PACSIN 3 F-BAR domain structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3Q84 PDB ENTRY 3Q84
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 PEG 3350, MgCl2, HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.45 64.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.849 α = 90 b = 54.653 β = 96.92 c = 193.655 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2010-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9800 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 97 29045 28175 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.77 92
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3Q84 2.6 28.01 29045 28175 1492 97.84 0.2275 0.22983 0.22746 0.2283 0.27415 0.268 RANDOM 84.281
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.28 1.8 0.86 -1.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.687 r_dihedral_angle_4_deg 24.083 r_dihedral_angle_3_deg 23.332 r_sphericity_free 8.549 r_dihedral_angle_1_deg 7.34 r_scangle_it 4.875 r_scbond_it 3.022 r_sphericity_bonded 2.683 r_angle_refined_deg 2.041 r_rigid_bond_restr 1.954
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.687 r_dihedral_angle_4_deg 24.083 r_dihedral_angle_3_deg 23.332 r_sphericity_free 8.549 r_dihedral_angle_1_deg 7.34 r_scangle_it 4.875 r_scbond_it 3.022 r_sphericity_bonded 2.683 r_angle_refined_deg 2.041 r_rigid_bond_restr 1.954 r_mcangle_it 1.683 r_mcbond_it 0.923 r_chiral_restr 0.159 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4599 Nucleic Acid Atoms Solvent Atoms 34 Heterogen Atoms 2
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling