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Crystal structure of Actinomyces fimbrial adhesin FimA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 295 17% PEG 2000 MME, 0.1M imidazole, 0.2M zinc acetate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.33 47.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.528 α = 90 b = 39.799 β = 98.34 c = 77.139 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE RIGAKU RAXIS IV 2009-06-11 M SINGLE WAVELENGTH 2 1 x-ray CCD ADSC QUANTUM 315 2009-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418 2 SYNCHROTRON APS BEAMLINE 24-ID-C 0.979 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 40 99.3 0.063 3.5 22677
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.9 1.97 99.5 0.203 11.8 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 1.9 40 21483 1161 99.21 0.21132 0.20915 0.2102 0.24902 0.2484 RANDOM 28.707
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 0.09 0.48 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.876 r_dihedral_angle_3_deg 12.979 r_dihedral_angle_4_deg 10.754 r_dihedral_angle_1_deg 6.001 r_scangle_it 2.786 r_scbond_it 1.581 r_angle_refined_deg 1.11 r_mcangle_it 1.044 r_mcbond_it 0.549 r_chiral_restr 0.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.876 r_dihedral_angle_3_deg 12.979 r_dihedral_angle_4_deg 10.754 r_dihedral_angle_1_deg 6.001 r_scangle_it 2.786 r_scbond_it 1.581 r_angle_refined_deg 1.11 r_mcangle_it 1.044 r_mcbond_it 0.549 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2040 Nucleic Acid Atoms Solvent Atoms 199 Heterogen Atoms 1
Software Software Software Name Purpose autoSHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling