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Crystal structure of a glycosyl hydrolase (BACOVA_03624) from Bacteroides ovatus at 2.30 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 277 40.0% polyethylene glycol 300, 0.1M phosphate-citrate pH 4.2, Additive: 0.003 M fructose, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.66 53.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 137.07 α = 90 b = 137.07 β = 90 c = 81.042 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-10-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9537,0.9795,0.9793 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 28.31 98 0.117 0.145 8.84 5.59 38497 -3 37.479
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 89.6 0.705 0.874 1.53
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 28.31 38468 1931 99.38 0.1864 0.1844 0.2241 0.1904 RANDOM 27.6448
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 0.37 0.74 -1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.542 r_dihedral_angle_3_deg 9.148 r_dihedral_angle_4_deg 9.004 r_dihedral_angle_1_deg 2.938 r_scangle_it 1.33 r_angle_refined_deg 1.234 r_scbond_it 0.851 r_angle_other_deg 0.798 r_mcangle_it 0.621 r_mcbond_it 0.326
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.542 r_dihedral_angle_3_deg 9.148 r_dihedral_angle_4_deg 9.004 r_dihedral_angle_1_deg 2.938 r_scangle_it 1.33 r_angle_refined_deg 1.234 r_scbond_it 0.851 r_angle_other_deg 0.798 r_mcangle_it 0.621 r_mcbond_it 0.326 r_chiral_restr 0.074 r_mcbond_other 0.051 r_bond_refined_d 0.015 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5662 Nucleic Acid Atoms Solvent Atoms 346 Heterogen Atoms 47
Software Software Software Name Purpose SOLVE phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction