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Crystal Structure of Serratia fonticola Sfh-I: glycerol complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 0.2M sodium acetate, 27% w/v PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.99 38.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.83 α = 90 b = 87.28 β = 90.85 c = 72.57 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2009-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 72.562 99.8 0.056 7.1 84788 84788 14.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.37 1.45 100 0.55 3.3 6.8 12336
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.37 26.23 84755 4241 99.83 0.1644 0.1628 0.1636 0.1956 0.195 RANDOM 16.5653
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.47 -0.22 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.789 r_dihedral_angle_4_deg 21.571 r_dihedral_angle_3_deg 11.677 r_sphericity_free 6.05 r_dihedral_angle_1_deg 5.907 r_sphericity_bonded 5.602 r_scangle_it 3.49 r_scbond_it 2.349 r_mcangle_it 1.646 r_angle_refined_deg 1.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.789 r_dihedral_angle_4_deg 21.571 r_dihedral_angle_3_deg 11.677 r_sphericity_free 6.05 r_dihedral_angle_1_deg 5.907 r_sphericity_bonded 5.602 r_scangle_it 3.49 r_scbond_it 2.349 r_mcangle_it 1.646 r_angle_refined_deg 1.322 r_rigid_bond_restr 1.287 r_mcbond_it 1.049 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3614 Nucleic Acid Atoms Solvent Atoms 426 Heterogen Atoms 14
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction