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Adamts1 in complex with N-hydroxyformamide inhibitors of ADAM-TS4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JIH
Crystallization Crystal Properties Matthews coefficient Solvent content 2.74 55.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.859 α = 90 b = 63.328 β = 91.24 c = 110.844 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2007-01-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E DW 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 36.01 93.9 4.2 29956 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.33 2.41 99.9 4.75
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2JIH 2.33 27.7 28426 28426 1514 98.64 0.23928 0.23625 0.2495 0.2966 0.3016 RANDOM 84.85
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.84 0.51 3.47 -1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.775 r_dihedral_angle_3_deg 17.328 r_dihedral_angle_4_deg 16.27 r_dihedral_angle_1_deg 7.083 r_scangle_it 2.943 r_scbond_it 1.875 r_angle_refined_deg 1.486 r_mcangle_it 1.206 r_angle_other_deg 0.95 r_mcbond_it 0.636
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.775 r_dihedral_angle_3_deg 17.328 r_dihedral_angle_4_deg 16.27 r_dihedral_angle_1_deg 7.083 r_scangle_it 2.943 r_scbond_it 1.875 r_angle_refined_deg 1.486 r_mcangle_it 1.206 r_angle_other_deg 0.95 r_mcbond_it 0.636 r_symmetry_hbond_refined 0.267 r_nbd_refined 0.236 r_symmetry_vdw_other 0.224 r_symmetry_vdw_refined 0.217 r_xyhbond_nbd_refined 0.212 r_nbd_other 0.197 r_nbtor_refined 0.183 r_metal_ion_refined 0.172 r_mcbond_other 0.116 r_nbtor_other 0.087 r_chiral_restr 0.078 r_xyhbond_nbd_other 0.071 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4350 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 97
Software Software Software Name Purpose StructureStudio data collection AMoRE phasing REFMAC refinement d*TREK data reduction d*TREK data scaling