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Adamts1 in complex with a novel N-hydroxyformamide inhibitors
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JIH
Crystallization Crystal Properties Matthews coefficient Solvent content 2.87 57.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.309 α = 90 b = 63.419 β = 89.88 c = 114.912 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2005-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E DW 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 114.71 96.8 31938 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 96.1 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2JIH 2.3 114.71 31307 30306 1615 96.47 0.21071 0.20804 0.2176 0.26068 0.2676 RANDOM 37.664
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.09 1.19 2.51 -1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.583 r_dihedral_angle_4_deg 22.828 r_dihedral_angle_3_deg 16.014 r_dihedral_angle_1_deg 5.918 r_scangle_it 2.295 r_scbond_it 1.422 r_angle_refined_deg 1.234 r_mcangle_it 0.993 r_angle_other_deg 0.8 r_mcbond_it 0.527
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.583 r_dihedral_angle_4_deg 22.828 r_dihedral_angle_3_deg 16.014 r_dihedral_angle_1_deg 5.918 r_scangle_it 2.295 r_scbond_it 1.422 r_angle_refined_deg 1.234 r_mcangle_it 0.993 r_angle_other_deg 0.8 r_mcbond_it 0.527 r_nbd_refined 0.204 r_nbtor_refined 0.179 r_nbd_other 0.177 r_xyhbond_nbd_refined 0.173 r_symmetry_vdw_other 0.159 r_metal_ion_refined 0.15 r_mcbond_other 0.107 r_nbtor_other 0.084 r_symmetry_hbond_refined 0.084 r_chiral_restr 0.067 r_symmetry_vdw_refined 0.045 r_xyhbond_nbd_other 0.017 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4336 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms 95
Software Software Software Name Purpose AMoRE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling