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Crystal structure of a probable acetyltransferases (GNAT family) from Chromobacterium violaceum ATCC 12472
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 35% Tacsimate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.99 38.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.665 α = 90 b = 67.434 β = 90 c = 85.271 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2010-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 98.9 0.071 30.1 4.1 32410 32081 2 2 39.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.92 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 40 2 2 31926 30311 1615 98.45 0.198 0.19745 0.19492 0.2014 0.24407 0.2438 RANDOM 27.458
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 0.26 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.992 r_dihedral_angle_4_deg 23.714 r_dihedral_angle_3_deg 14.665 r_dihedral_angle_1_deg 6.161 r_scangle_it 4.51 r_scbond_it 3.093 r_angle_refined_deg 1.923 r_mcangle_it 1.842 r_mcbond_it 1.146 r_angle_other_deg 1.032
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.992 r_dihedral_angle_4_deg 23.714 r_dihedral_angle_3_deg 14.665 r_dihedral_angle_1_deg 6.161 r_scangle_it 4.51 r_scbond_it 3.093 r_angle_refined_deg 1.923 r_mcangle_it 1.842 r_mcbond_it 1.146 r_angle_other_deg 1.032 r_mcbond_other 0.385 r_chiral_restr 0.131 r_bond_refined_d 0.022 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2909 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms 6
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing SHELX model building ARP/wARP model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling SHELX phasing