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Crystal structure of carveol dehydrogenase from Mycobacterium avium bound to nicotinamide adenine dinucleotide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 MyavA01326iA1 PS00693 at 36.4 mg/mL against JCSG+ screen condition A5, 0.2 M MgFormate, 20% PEG 3350 with 25% ethylene glycol as cryo-protectant, Crystal tracking ID 216974a5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.6 52.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 156.47 α = 90 b = 147.51 β = 102.49 c = 83.24 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.97946 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 98.1 0.068 12.42 3.6 121812 -3 32.649
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 88.2 0.369 2.5 2.8 8066
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 50 121719 6117 98.13 0.173 0.1708 0.1776 0.2144 0.2233 RANDOM 28.4339
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.52 -0.67 0.91 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.7 r_dihedral_angle_4_deg 20.873 r_dihedral_angle_3_deg 12.666 r_dihedral_angle_1_deg 5.961 r_scangle_it 3.159 r_scbond_it 2.016 r_angle_refined_deg 1.501 r_mcangle_it 1.181 r_mcbond_it 0.69 r_chiral_restr 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.7 r_dihedral_angle_4_deg 20.873 r_dihedral_angle_3_deg 12.666 r_dihedral_angle_1_deg 5.961 r_scangle_it 3.159 r_scbond_it 2.016 r_angle_refined_deg 1.501 r_mcangle_it 1.181 r_mcbond_it 0.69 r_chiral_restr 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12194 Nucleic Acid Atoms Solvent Atoms 871 Heterogen Atoms 264
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction