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Monoclinic form of Human C-Reactive Protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LJ7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 289 12% PEG 4000, 0.1M Tris-HCl, 0.2M MgCl2, 0.05M LiCl, pH 8.0, VAPOR DIFFUSION, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.44 49.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.6 α = 90 b = 143.2 β = 89.7 c = 161.2 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.979689 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 20 95 0.153 6.7 1.96 86781 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.08 92.6 1.99 1.79
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1LJ7 3 20 82032 82034 4380 97.81 0.22946 0.22651 0.28521 0.247 RANDOM 16.827
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.93 0.53 0.76 -1.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.703 r_dihedral_angle_4_deg 20.771 r_dihedral_angle_3_deg 18.365 r_dihedral_angle_1_deg 6.069 r_scangle_it 1.877 r_angle_refined_deg 1.697 r_scbond_it 1.04 r_mcangle_it 0.89 r_mcbond_it 0.474 r_chiral_restr 0.104
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.703 r_dihedral_angle_4_deg 20.771 r_dihedral_angle_3_deg 18.365 r_dihedral_angle_1_deg 6.069 r_scangle_it 1.877 r_angle_refined_deg 1.697 r_scbond_it 1.04 r_mcangle_it 0.89 r_mcbond_it 0.474 r_chiral_restr 0.104 r_bond_refined_d 0.022 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 32640 Nucleic Acid Atoms Solvent Atoms 397 Heterogen Atoms 40
Software Software Software Name Purpose ADSC data collection AMoRE phasing REFMAC refinement XDS data reduction XSCALE data scaling