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Crystal Structure of a pre-translocation state MBP-Maltose transporter complex bound to AMP-PNP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 32% PEG 400, 0.1 M HEPES, 40 mM magnesium chloride, 50 mM sodium chloride , VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 7.5
Crystal Properties Matthews coefficient Solvent content 3.93 68.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.021 α = 90.05 b = 93.36 β = 102.57 c = 119.761 γ = 105.01
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2009-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.03326 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 71.7 0.043 53826 53826
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 23.6 0.417 1.7 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 19.95 53826 52679 2864 77 0.23928 0.23716 0.2344 0.27878 0.275 RANDOM 92.327
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -0.02 -0.04 0.09 -0.12 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.798 r_dihedral_angle_3_deg 16.065 r_dihedral_angle_4_deg 11.568 r_dihedral_angle_1_deg 4.216 r_angle_refined_deg 0.894 r_scangle_it 0.462 r_mcangle_it 0.267 r_scbond_it 0.258 r_mcbond_it 0.144 r_chiral_restr 0.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.798 r_dihedral_angle_3_deg 16.065 r_dihedral_angle_4_deg 11.568 r_dihedral_angle_1_deg 4.216 r_angle_refined_deg 0.894 r_scangle_it 0.462 r_mcangle_it 0.267 r_scbond_it 0.258 r_mcbond_it 0.144 r_chiral_restr 0.058 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14536 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 153
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling