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The PABC1 MLLE domain bound to the variant PAM2 motif of LARP4B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 289 2 ul protein solution at 43 mg/ml containing the 1.5 fold molar amount of peptide ligand was mixed with 2ul reservoir solution containing 1.5M magnesium sulfate, pH 6.5, VAPOR DIFFUSION, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.35 47.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.15 α = 90 b = 57.194 β = 90 c = 59.514 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 41.24 96.9 0.077 14.8 3.68 11493 11136
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 41.24 10805 329 96.92 0.1735 0.17224 0.1729 0.21786 0.2163 RANDOM 22.173
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 -0.62 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 21.333 r_dihedral_angle_3_deg 15.627 r_dihedral_angle_4_deg 8.631 r_scangle_it 7.256 r_dihedral_angle_1_deg 4.815 r_scbond_it 4.422 r_mcangle_it 2.773 r_rigid_bond_restr 2.11 r_angle_refined_deg 1.607 r_mcbond_it 1.575
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 21.333 r_dihedral_angle_3_deg 15.627 r_dihedral_angle_4_deg 8.631 r_scangle_it 7.256 r_dihedral_angle_1_deg 4.815 r_scbond_it 4.422 r_mcangle_it 2.773 r_rigid_bond_restr 2.11 r_angle_refined_deg 1.607 r_mcbond_it 1.575 r_chiral_restr 0.123 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 687 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms
Software Software Software Name Purpose DNA data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling