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Crystal structure of the glutathione-S-transferase Xi from Phanerochaete chrysosporium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 8.5 277 20 to 30 % polyethylene glycol 4000 (PEG 4000), 0 to 0.2 M magnesium or calcium chloride and 0.1 M Tris-HCl, pH 8.5, Microbatch, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.59 52.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.823 α = 90 b = 70.331 β = 98.79 c = 72.566 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.980547 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 46.66 98.9 0.037 19.8 36622
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.43 96 0.188 4.8 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 46.66 36622 36622 1831 98.91 0.19245 0.19245 0.19059 0.1894 0.2275 0.2243 RANDOM 39.671
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.55 1.45 4.29 -1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.625 r_dihedral_angle_4_deg 15.657 r_dihedral_angle_3_deg 13.163 r_dihedral_angle_1_deg 6.237 r_scangle_it 2.819 r_scbond_it 1.793 r_angle_refined_deg 1.246 r_mcangle_it 1.241 r_mcbond_it 0.658 r_chiral_restr 0.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.625 r_dihedral_angle_4_deg 15.657 r_dihedral_angle_3_deg 13.163 r_dihedral_angle_1_deg 6.237 r_scangle_it 2.819 r_scbond_it 1.793 r_angle_refined_deg 1.246 r_mcangle_it 1.241 r_mcbond_it 0.658 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5010 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms 20
Software Software Software Name Purpose Xnemo data collection SHELX model building REFMAC refinement XDS data reduction SCALA data scaling SHELX phasing