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Structural basis for catalytic activation of a serine recombinase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 292 1.8M Ammonium Sulfate, 100 mM HEPES pH 7.0, 20% Ethylene Glycol, 5% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.5 50.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.208 α = 90 b = 128.208 β = 90 c = 182.015 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 73 CCD ADSC QUANTUM 315r 2009-11-23 M SINGLE WAVELENGTH 2 1 CCD MARMOSAIC 225 mm CCD 2009-12-19
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID 2 SYNCHROTRON APS BEAMLINE 21-ID-F 0.9787 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 100 90 156340 140384 5.9 170.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.86 0.966 0.825 1.79 6.3 7798
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 41.97 156340 140384 7398 94.48 0.20886 0.2069 0.2215 0.24645 0.2589 RANDOM 32.085
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.09 0.17 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.767 r_dihedral_angle_4_deg 17.489 r_dihedral_angle_3_deg 13.668 r_dihedral_angle_1_deg 4.56 r_scangle_it 2.025 r_scbond_it 1.207 r_angle_refined_deg 0.936 r_mcangle_it 0.735 r_mcbond_it 0.373 r_chiral_restr 0.065
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.767 r_dihedral_angle_4_deg 17.489 r_dihedral_angle_3_deg 13.668 r_dihedral_angle_1_deg 4.56 r_scangle_it 2.025 r_scbond_it 1.207 r_angle_refined_deg 0.936 r_mcangle_it 0.735 r_mcbond_it 0.373 r_chiral_restr 0.065 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12032 Nucleic Acid Atoms Solvent Atoms 890 Heterogen Atoms 120
Software Software Software Name Purpose HKL-3000 data collection SOLVE phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling