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Aerobic ternary complex of urate oxidase with azide and chloride
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L8W PDB ENTRY 3L8W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 10 291 SOLUTION A (0.1 ML): 50MM TRIS BUFFER, 0.3 M SODIUM AZIDE, SATURATED WITH URIC ACID BUFFER, VAPOR DIFFUSION, SITTING DROP, temperature 291K, pH 10.0
Crystal Properties Matthews coefficient Solvent content 2.81 57.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.493 α = 90 b = 94.993 β = 90 c = 104.219 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 291 CCD ADSC QUANTUM 315r BENT MIRROR 2009-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 39.7 99.4 0.055 22.5 5.5 69903 4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.5 97.1 0.233 3.8 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R PDB ENTRY 3L8W 1.45 39.7 69656 69656 4202 99.4 0.201 0.2307 0.255 0.2302 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 18 2754.95
RMS Deviations Key Refinement Restraint Deviation s_angle_d 0.078 s_non_zero_chiral_vol 0.065 s_anti_bump_dis_restr 0.057 s_zero_chiral_vol 0.05 s_similar_adp_cmpnt 0.046 s_bond_d 0.032 s_from_restr_planes 0.027 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2362 Nucleic Acid Atoms Solvent Atoms 383 Heterogen Atoms 14
Software Software Software Name Purpose ADSC data collection SHELX model building SHELXL-97 refinement MOSFLM data reduction SCALA data scaling TRUNCATE data scaling SHELX phasing