☰ Navigation Tabs
Actinidin from Actinidia arguta planch (Sarusashi)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 288 30% PEG 400, 0.1M sodium acetate, 30mM Cadmium chloride , pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 2.01 38.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.519 α = 90 b = 56.039 β = 90 c = 70.916 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS VII Mirrors 2008-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E DW 2.29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 110 99.3 0.046 51.3 6.8 10212 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 94.2 0.077 33.8 4.3 914
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 35 10212 10211 1014 99.28 0.1739 0.1683 0.1705 0.222 0.2232 RANDOM 18.6249
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 -0.38 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.7 r_dihedral_angle_4_deg 16.328 r_dihedral_angle_3_deg 13.898 r_dihedral_angle_1_deg 5.284 r_scangle_it 1.834 r_scbond_it 1.203 r_angle_refined_deg 1.032 r_mcangle_it 0.836 r_mcbond_it 0.472 r_metal_ion_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.7 r_dihedral_angle_4_deg 16.328 r_dihedral_angle_3_deg 13.898 r_dihedral_angle_1_deg 5.284 r_scangle_it 1.834 r_scbond_it 1.203 r_angle_refined_deg 1.032 r_mcangle_it 0.836 r_mcbond_it 0.472 r_metal_ion_refined 0.314 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.22 r_nbd_refined 0.203 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.072 r_symmetry_hbond_refined 0.06 r_symmetry_metal_ion_refined 0.043 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1689 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms 7
Software Software Software Name Purpose SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection DENZO data reduction SCALEPACK data scaling