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Crystal Structure of HLA A*02:03 Bound to HBV Core 18-27
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.1M HEPSE pH7.5, 1.4M sodium citrate tribasic dihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.92 57.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.279 α = 70.2 b = 68.269 β = 84.4 c = 68.318 γ = 84.45
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD Bruker Platinum 135 2010-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 64.12 95.76 0.066 4.68 4 68748 2 11.062
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.16 2.22 80.7 0.3449 2.1 1.71 3517
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.16 64.12 50693 2733 95.88 0.1848 0.18221 0.1816 0.23409 0.2326 RANDOM 18.144
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.06 0.03 -0.02 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.764 r_dihedral_angle_4_deg 22.504 r_dihedral_angle_3_deg 19.434 r_dihedral_angle_1_deg 7.824 r_scangle_it 6.669 r_scbond_it 4.462 r_mcangle_it 2.762 r_mcbond_it 1.62 r_angle_refined_deg 1.313 r_chiral_restr 0.125
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.764 r_dihedral_angle_4_deg 22.504 r_dihedral_angle_3_deg 19.434 r_dihedral_angle_1_deg 7.824 r_scangle_it 6.669 r_scbond_it 4.462 r_mcangle_it 2.762 r_mcbond_it 1.62 r_angle_refined_deg 1.313 r_chiral_restr 0.125 r_gen_planes_refined 0.017 r_bond_refined_d 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6354 Nucleic Acid Atoms Solvent Atoms 450 Heterogen Atoms
Software Software Software Name Purpose PROTEUM PLUS data collection AMoRE phasing REFMAC refinement PROTEUM PLUS data reduction PROTEUM PLUS data scaling