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Human CK2 catalytic domain in complex with a benzopyridoindole derivative inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 36% polyethylene glycol 5000 monomethyl ether, 150 mM ammonium sulfate and 100 mM Tris-HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.04 39.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.016 α = 90 b = 46.012 β = 111.69 c = 64.13 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 59.6 98.5 0.096 0.096 9.6 3.6 18672 18672 24.07
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 99.8 0.402 0.402 3.7 3.7 1744
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 59.59 18672 18672 1906 98.65 0.20828 0.20828 0.20439 0.2087 0.26856 RANDOM 25.987
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.29 -0.42 2.23 -1.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.582 r_dihedral_angle_4_deg 20.933 r_dihedral_angle_3_deg 16.339 r_dihedral_angle_1_deg 5.681 r_scangle_it 2.624 r_scbond_it 1.693 r_angle_refined_deg 1.342 r_mcangle_it 1.281 r_mcbond_it 0.715 r_chiral_restr 0.094
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.582 r_dihedral_angle_4_deg 20.933 r_dihedral_angle_3_deg 16.339 r_dihedral_angle_1_deg 5.681 r_scangle_it 2.624 r_scbond_it 1.693 r_angle_refined_deg 1.342 r_mcangle_it 1.281 r_mcbond_it 0.715 r_chiral_restr 0.094 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2788 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms 35
Software Software Software Name Purpose ADSC data collection AMoRE phasing REFMAC refinement XDS data reduction XDS data scaling