☰ Navigation Tabs
Crystal structure of glutamate racemase from Francisella tularensis subsp. tularensis SCHU S4 in complex with D-glutamate.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 295 25% PEG 3350, 0.1 M Tris, pH 9, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.06 40.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.06 α = 90 b = 98.06 β = 90 c = 154.15 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD MIRROR 2010-08-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 25.2 99.9 0.091 14.71 12.6 172747 172747 -3 24.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.65 1.68 99.8 0.499 3.16 11 9026
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 25.22 86104 86104 4544 99.87 0.16416 0.16265 0.1738 0.1927 0.2016 RANDOM 12.396
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 -0.31 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.64 r_dihedral_angle_4_deg 21.185 r_dihedral_angle_3_deg 12.299 r_dihedral_angle_1_deg 5.812 r_scangle_it 4.425 r_scbond_it 2.902 r_mcangle_it 1.64 r_angle_refined_deg 1.537 r_angle_other_deg 0.986 r_mcbond_it 0.923
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.64 r_dihedral_angle_4_deg 21.185 r_dihedral_angle_3_deg 12.299 r_dihedral_angle_1_deg 5.812 r_scangle_it 4.425 r_scbond_it 2.902 r_mcangle_it 1.64 r_angle_refined_deg 1.537 r_angle_other_deg 0.986 r_mcbond_it 0.923 r_mcbond_other 0.271 r_chiral_restr 0.094 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6168 Nucleic Acid Atoms Solvent Atoms 601 Heterogen Atoms 30
Software Software Software Name Purpose Blu-Ice data collection CCP4 model building MrBUMP phasing PHENIX model building REFMAC refinement XSCALE data scaling CCP4 phasing PHENIX phasing