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MDR769 HIV-1 protease complexed with CA/p2 hepta-peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 298 0.8M NaCl
0.1 M MES
, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.36 47.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.212 α = 90 b = 45.212 β = 90 c = 103.405 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 CCD MARMOSAIC 300 mm CCD 2008-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.0332 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 41.43 99.8 19214 19176 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 19.84 18248 18210 967 99.79 0.19248 0.19507 0.19248 0.1917 0.24416 0.2414 RANDOM 29.346
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.02 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.14 r_dihedral_angle_3_deg 14.301 r_dihedral_angle_4_deg 12.856 r_dihedral_angle_1_deg 6.175 r_scangle_it 4.102 r_scbond_it 2.523 r_mcangle_it 1.823 r_angle_refined_deg 1.587 r_mcbond_it 1.236 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.14 r_dihedral_angle_3_deg 14.301 r_dihedral_angle_4_deg 12.856 r_dihedral_angle_1_deg 6.175 r_scangle_it 4.102 r_scbond_it 2.523 r_mcangle_it 1.823 r_angle_refined_deg 1.587 r_mcbond_it 1.236 r_nbtor_refined 0.313 r_nbd_refined 0.247 r_symmetry_vdw_refined 0.236 r_symmetry_hbond_refined 0.167 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.099 r_bond_refined_d 0.016 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1572 Nucleic Acid Atoms Solvent Atoms 270 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling