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MDR769 HIV-1 protease complexed with NC/p1 hepta-peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 298 0.8M NaCl
0.1 M MES
, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.37 48.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.613 α = 90 b = 45.613 β = 90 c = 101.998 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 CCD MARMOSAIC 300 mm CCD 2008-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.0332 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 27.26 100 40904 40904 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.45 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 34 26024 26011 1371 99.95 0.19168 0.19396 0.19168 0.1919 0.23618 0.2364 RANDOM 20.419
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.923 r_dihedral_angle_3_deg 11.835 r_dihedral_angle_4_deg 9.506 r_dihedral_angle_1_deg 5.935 r_scangle_it 3.842 r_scbond_it 2.404 r_mcangle_it 1.477 r_angle_refined_deg 1.319 r_mcbond_it 0.978 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.923 r_dihedral_angle_3_deg 11.835 r_dihedral_angle_4_deg 9.506 r_dihedral_angle_1_deg 5.935 r_scangle_it 3.842 r_scbond_it 2.404 r_mcangle_it 1.477 r_angle_refined_deg 1.319 r_mcbond_it 0.978 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.238 r_symmetry_hbond_refined 0.23 r_nbd_refined 0.211 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1569 Nucleic Acid Atoms Solvent Atoms 298 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling