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Mycobacterium tuberculosis PknB kinase domain L33D mutant (crystal form 2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MRU PDB ENTRY 1MRU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 277 27% PEG 3350, 100mM Tris pH 8.5, 200mM (NH4)2SO4, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.35 47.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.341 α = 90 b = 51.603 β = 90 c = 155.126 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2004-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 97.9 0.034 18.2 3.8 41724
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.69 88.2 0.315 3.4 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MRU 1.6 20 39545 2154 100 0.14291 0.14086 0.1929 0.18037 0.2192 RANDOM 14.178
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 -0.16 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.57 r_dihedral_angle_4_deg 17.058 r_dihedral_angle_3_deg 11.473 r_dihedral_angle_1_deg 5.716 r_scangle_it 4.312 r_scbond_it 2.866 r_mcangle_it 1.894 r_angle_refined_deg 1.488 r_rigid_bond_restr 1.205 r_mcbond_it 1.172
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.57 r_dihedral_angle_4_deg 17.058 r_dihedral_angle_3_deg 11.473 r_dihedral_angle_1_deg 5.716 r_scangle_it 4.312 r_scbond_it 2.866 r_mcangle_it 1.894 r_angle_refined_deg 1.488 r_rigid_bond_restr 1.205 r_mcbond_it 1.172 r_angle_other_deg 0.893 r_mcbond_other 0.351 r_symmetry_vdw_refined 0.3 r_symmetry_vdw_other 0.292 r_xyhbond_nbd_refined 0.235 r_symmetry_hbond_refined 0.229 r_chiral_restr 0.08 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2094 Nucleic Acid Atoms Solvent Atoms 352 Heterogen Atoms 45
Software Software Software Name Purpose Blu-Ice data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling