☰ Navigation Tabs
Crystal Structure of Cell Division Cycle 25C Protein Isoform A from Homo sapiens
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IFV PDBID 2IFV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277 0.1M Bis Tris pH 5.5, 23% PEG 3350, 0.2M Ammonium Sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.22 61.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.187 α = 90 b = 96.187 β = 90 c = 61.188 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2010-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97929 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.63 50 98.6 0.097 7.4 8.6 9980 9980 78
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.63 2.68 87.8 0.759 2.3 7.3 437
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDBID 2IFV 2.63 49.31 9851 9851 474 98.4 0.199 0.199 0.198 0.2186 0.218 0.2447 RANDOM 80.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.4335 7.4335 -14.867
RMS Deviations Key Refinement Restraint Deviation f_other_torsion 19.28 f_omega_torsion 2.73 f_angle_deg 1.11 f_bond_d 0.01 f_dihedral_angle_d f_incorr_chiral_ct f_pseud_angle f_trig_c_planes f_gen_planes f_it
RMS Deviations Key Refinement Restraint Deviation f_other_torsion 19.28 f_omega_torsion 2.73 f_angle_deg 1.11 f_bond_d 0.01 f_dihedral_angle_d f_incorr_chiral_ct f_pseud_angle f_trig_c_planes f_gen_planes f_it f_nbd f_improper_torsion f_chiral_improper_torsion f_sum_occupancies f_utility_distance f_utility_angle f_utility_torsion f_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1338 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 20
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 data collection CCP4 model building BALBES phasing BUSTER refinement REFMAC refinement PHENIX refinement HKL-3000 data reduction HKL-3000 data scaling CCP4 phasing