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Crystal structure of estrogen receptor beta ligand binding domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 277.15 0.2 M Ammonium Acetate, 0.1 M BIS-TRIS pH 5.5, 17% PEG10000 (v/v), VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 2.7 54.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.43 α = 90 b = 70.43 β = 90 c = 110.53 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 AREA DETECTOR MARRESEARCH 2009-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 98.6 0.045 14.18 31131 30709 -3 33.717
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.4 98.8 0.203 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 19.08 30705 1535 100 0.1883 0.1843 0.1885 0.2664 0.2656 RANDOM 26.3963
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.79 r_dihedral_angle_4_deg 19.906 r_dihedral_angle_3_deg 18.009 r_dihedral_angle_1_deg 6.052 r_scangle_it 5.781 r_scbond_it 3.931 r_mcangle_it 2.253 r_rigid_bond_restr 2.148 r_angle_refined_deg 1.864 r_mcbond_it 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.79 r_dihedral_angle_4_deg 19.906 r_dihedral_angle_3_deg 18.009 r_dihedral_angle_1_deg 6.052 r_scangle_it 5.781 r_scbond_it 3.931 r_mcangle_it 2.253 r_rigid_bond_restr 2.148 r_angle_refined_deg 1.864 r_mcbond_it 1.31 r_chiral_restr 0.112 r_bond_refined_d 0.021 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3747 Nucleic Acid Atoms Solvent Atoms 303 Heterogen Atoms 40
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data scaling