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Crystal Structure of 6s-98S FIV Protease with Darunavir bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HAH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.41 49.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.17 α = 90 b = 81.17 β = 90 c = 33.59 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARmosaic325 Rh coated flat mirror 2010-01-22 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97945 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 27 99.5 0.051 12.8 2.8 27120 27120 21.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 97.1 0.346 0.346 2.2 2.7 3841
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2HAH 1.7 27 25748 1358 99.52 0.1873 0.1852 0.1779 0.2286 0.2217 RANDOM 24.0154
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.75 5.75 -11.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.789 r_dihedral_angle_3_deg 17.646 r_dihedral_angle_4_deg 16.076 r_dihedral_angle_1_deg 7.923 r_scangle_it 2.226 r_scbond_it 1.496 r_angle_refined_deg 1.285 r_mcangle_it 1.116 r_mcbond_it 0.637 r_chiral_restr 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.789 r_dihedral_angle_3_deg 17.646 r_dihedral_angle_4_deg 16.076 r_dihedral_angle_1_deg 7.923 r_scangle_it 2.226 r_scbond_it 1.496 r_angle_refined_deg 1.285 r_mcangle_it 1.116 r_mcbond_it 0.637 r_chiral_restr 0.12 r_bond_refined_d 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1778 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 80
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction