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Crystal structure of H. influenzae rhomboid GlpG with disordered loop 4, helix 5 and loop 5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 vapour diffusion 6 298 PEG 4000, NaCl, Ethanol, glycerol, pH 6.0, vapour diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.46 49.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.927 α = 90 b = 35.19 β = 104.06 c = 52.672 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.84 50 96.9 0.069 11.7 2.1 5066
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.84 2.95 98.8 0.42 2.1 509
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.84 50 5066 231 96.15 0.246 0.2434 0.2433 0.2966 0.2963 RANDOM 45.2444
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.57 0.11 4.03 -1.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.479 r_dihedral_angle_3_deg 21.57 r_dihedral_angle_4_deg 9.002 r_dihedral_angle_1_deg 7.147 r_scangle_it 2.525 r_angle_refined_deg 1.606 r_scbond_it 1.558 r_mcangle_it 1.29 r_mcbond_it 0.68 r_chiral_restr 0.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.479 r_dihedral_angle_3_deg 21.57 r_dihedral_angle_4_deg 9.002 r_dihedral_angle_1_deg 7.147 r_scangle_it 2.525 r_angle_refined_deg 1.606 r_scbond_it 1.558 r_mcangle_it 1.29 r_mcbond_it 0.68 r_chiral_restr 0.122 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1259 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction