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Design and optimization of new piperidines as renin inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.75 293 20-30% PEG4000
0.6M KCl or NaCl, pH 4.75, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.45 49.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.57 α = 90 b = 93.633 β = 90 c = 117.896 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 58 85.9 0.082 6.9 3.3 35174 28739 36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.4 33.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 58 28739 27245 1445 85.76 0.202 0.202 0.19885 0.1954 0.25935 0.251 RANDOM 42.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.76 2.86 -2.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.842 r_dihedral_angle_3_deg 16.832 r_dihedral_angle_4_deg 16.353 r_dihedral_angle_1_deg 7.274 r_mcangle_it 2.439 r_scangle_it 2.158 r_mcbond_it 1.504 r_scbond_it 1.367 r_angle_refined_deg 1.293 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.842 r_dihedral_angle_3_deg 16.832 r_dihedral_angle_4_deg 16.353 r_dihedral_angle_1_deg 7.274 r_mcangle_it 2.439 r_scangle_it 2.158 r_mcbond_it 1.504 r_scbond_it 1.367 r_angle_refined_deg 1.293 r_nbtor_refined 0.309 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.201 r_symmetry_hbond_refined 0.133 r_xyhbond_nbd_refined 0.129 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5161 Nucleic Acid Atoms Solvent Atoms 180 Heterogen Atoms 116
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling