☰ Navigation Tabs
Ligand-binding domain of GluA2 (flip) ionotropic glutamate receptor in complex with an allosteric modulator
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 277 18% PEG 4000, 100mM Sodium Cacodylate pH 4.0, 50mM Lithium Sulphate, 5% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.27 45.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.89 α = 90 b = 87.45 β = 90 c = 47.32 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2006-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 43.73 94.7 0.086 9.8 5.17 15217 15217 2 2 34.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.18 91.4 0.332 4 5.28 1441
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 43.73 14467 14467 750 94.64 0.21943 0.21943 0.21714 0.2155 0.26295 0.2607 RANDOM 23.599
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.81 1.69 -0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.651 r_dihedral_angle_4_deg 19.169 r_dihedral_angle_3_deg 14.748 r_dihedral_angle_1_deg 5.85 r_scangle_it 2.955 r_scbond_it 2.233 r_angle_refined_deg 1.366 r_mcbond_it 1.333 r_mcangle_it 1.201 r_angle_other_deg 1.167
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.651 r_dihedral_angle_4_deg 19.169 r_dihedral_angle_3_deg 14.748 r_dihedral_angle_1_deg 5.85 r_scangle_it 2.955 r_scbond_it 2.233 r_angle_refined_deg 1.366 r_mcbond_it 1.333 r_mcangle_it 1.201 r_angle_other_deg 1.167 r_symmetry_vdw_other 0.271 r_nbd_refined 0.196 r_nbd_other 0.191 r_xyhbond_nbd_refined 0.188 r_symmetry_vdw_refined 0.188 r_nbtor_refined 0.173 r_symmetry_hbond_refined 0.17 r_mcbond_other 0.15 r_chiral_restr 0.114 r_nbtor_other 0.086 r_bond_refined_d 0.013 r_bond_other_d 0.006 r_gen_planes_refined 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2033 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 66
Software Software Software Name Purpose CrystalClear data collection AMoRE phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling