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Fk1 domain mutant A19T of FKBP51, crystal form I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O5P PDB entry 3O5P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 30 % Jeffamine ED-2001, 0.1 M HEPES, pH 7.0, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.11 41.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.978 α = 90 b = 47.978 β = 90 c = 88.998 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9723 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 41.559 99.1 0.063 0.063 13.1 4.1 29538 14.32
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 98.2 0.399 0.399 1.8 3.8 4215
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3O5P 1.3 20 29516 1487 98.81 0.1735 0.1718 0.1785 0.2062 0.2104 RANDOM 17.7403
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.539 r_dihedral_angle_3_deg 13.73 r_dihedral_angle_4_deg 9.673 r_sphericity_free 8.811 r_dihedral_angle_1_deg 7.97 r_sphericity_bonded 5.452 r_scangle_it 3.993 r_scbond_it 3.006 r_mcangle_it 2.264 r_mcbond_it 1.745
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.539 r_dihedral_angle_3_deg 13.73 r_dihedral_angle_4_deg 9.673 r_sphericity_free 8.811 r_dihedral_angle_1_deg 7.97 r_sphericity_bonded 5.452 r_scangle_it 3.993 r_scbond_it 3.006 r_mcangle_it 2.264 r_mcbond_it 1.745 r_angle_refined_deg 1.554 r_rigid_bond_restr 1.473 r_mcbond_other 0.912 r_angle_other_deg 0.885 r_symmetry_hbond_refined 0.282 r_nbd_refined 0.281 r_symmetry_vdw_other 0.269 r_symmetry_vdw_refined 0.268 r_xyhbond_nbd_refined 0.221 r_nbd_other 0.204 r_nbtor_refined 0.181 r_chiral_restr 0.092 r_nbtor_other 0.087 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 982 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 16
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction