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Fk1 domain of FKBP51, crystal form VIII
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O5I PDB entry 3O5I, chain A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 32 % PEG3350, 0.05 M NH4OAc, 0.1 M HEPES, pH 7.5, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 41.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.802 α = 90 b = 48.43 β = 114.5 c = 76.317 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.886 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 69.505 99.3 0.088 0.088 11.6 3.5 12932 12932 53.37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 99.7 0.392 0.392 1.9 3.6 1890
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3O5I, chain A 2.7 20 12890 629 99.23 0.2267 0.2239 0.224 0.2826 0.2864 RANDOM 47.7977
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.82 -1.44 1.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.656 r_dihedral_angle_3_deg 16.111 r_dihedral_angle_4_deg 12.899 r_dihedral_angle_1_deg 6.637 r_scangle_it 1.403 r_angle_refined_deg 1.223 r_scbond_it 0.874 r_mcangle_it 0.632 r_mcbond_it 0.353 r_symmetry_vdw_refined 0.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.656 r_dihedral_angle_3_deg 16.111 r_dihedral_angle_4_deg 12.899 r_dihedral_angle_1_deg 6.637 r_scangle_it 1.403 r_angle_refined_deg 1.223 r_scbond_it 0.874 r_mcangle_it 0.632 r_mcbond_it 0.353 r_symmetry_vdw_refined 0.323 r_nbtor_refined 0.306 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.135 r_symmetry_hbond_refined 0.099 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3794 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction