☰ Navigation Tabs
Crystal structure of the N-terminal domain of human Symplekin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 50mM Bis-Tris, 40mM ammonium sulfate, 40% (v/v) pentaerythritol ethoxylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.89 34.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.596 α = 90 b = 63.033 β = 90.59 c = 62.283 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 30 98.6 0.029 40.3676 3.6 62696
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.45 90.9 0.492 1.697 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 30 59384 3176 98.77 0.16034 0.15867 0.2027 0.19247 0.2301 RANDOM 17.503
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 -0.08 0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.231 r_dihedral_angle_4_deg 15.67 r_dihedral_angle_3_deg 13.865 r_scangle_it 6.391 r_dihedral_angle_1_deg 4.417 r_scbond_it 4.291 r_mcangle_it 2.674 r_rigid_bond_restr 1.935 r_mcbond_it 1.632 r_angle_refined_deg 1.527
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.231 r_dihedral_angle_4_deg 15.67 r_dihedral_angle_3_deg 13.865 r_scangle_it 6.391 r_dihedral_angle_1_deg 4.417 r_scbond_it 4.291 r_mcangle_it 2.674 r_rigid_bond_restr 1.935 r_mcbond_it 1.632 r_angle_refined_deg 1.527 r_chiral_restr 0.215 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2409 Nucleic Acid Atoms Solvent Atoms 332 Heterogen Atoms 4
Software Software Software Name Purpose SnB phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling