X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1H4L 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17293PEG 3350, KI, Bis-Tris Propane, pH 7, vapor diffusion, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.0559.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 117.124α = 90
b = 117.124β = 90
c = 155.599γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102003-01-15SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.934ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.952598.60.0417.388794
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.9520.291.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1H4L1.9519.968427144741000.227630.226130.25626RANDOM24.947
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.380.190.38-0.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.117
r_scangle_it2.49
r_scbond_it1.654
r_angle_refined_deg1.18
r_mcangle_it1
r_mcbond_it0.523
r_nbd_refined0.216
r_symmetry_vdw_refined0.209
r_symmetry_hbond_refined0.208
r_xyhbond_nbd_refined0.163
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.117
r_scangle_it2.49
r_scbond_it1.654
r_angle_refined_deg1.18
r_mcangle_it1
r_mcbond_it0.523
r_nbd_refined0.216
r_symmetry_vdw_refined0.209
r_symmetry_hbond_refined0.208
r_xyhbond_nbd_refined0.163
r_chiral_restr0.082
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6846
Nucleic Acid Atoms
Solvent Atoms234
Heterogen Atoms25

Software

Software
Software NamePurpose
REFMACrefinement
AMoREphasing
CNSrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction