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Crystal Structure of Bovine Xanthine Oxidase in Complex with Indole-3-Aldehyde
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Sitting Batch 7.2 298 PEG 8000, pH 7.2, Sitting Batch, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.51 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.409 α = 90 b = 73.704 β = 97.12 c = 138.922 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MAR CCD 165 mm 2010-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9793 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 45.2 96.5 339741 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.642 96.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 45.2 339741 17094 96.47 0.2166 0.215 0.2119 0.2463 0.2437 RANDOM 21.6446
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.89 0.02 0.49 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.932 r_dihedral_angle_4_deg 15.715 r_dihedral_angle_3_deg 13.961 r_dihedral_angle_1_deg 5.874 r_scangle_it 3.018 r_scbond_it 1.943 r_angle_refined_deg 1.336 r_mcangle_it 1.169 r_mcbond_it 0.753 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.932 r_dihedral_angle_4_deg 15.715 r_dihedral_angle_3_deg 13.961 r_dihedral_angle_1_deg 5.874 r_scangle_it 3.018 r_scbond_it 1.943 r_angle_refined_deg 1.336 r_mcangle_it 1.169 r_mcbond_it 0.753 r_nbtor_refined 0.302 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.173 r_xyhbond_nbd_refined 0.121 r_symmetry_hbond_refined 0.117 r_chiral_restr 0.085 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18872 Nucleic Acid Atoms Solvent Atoms 1600 Heterogen Atoms 200
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling CCP4 phasing