☰ Navigation Tabs
Crystal structure of a STRUCTURAL GENOMICS, UNKNOWN FUNCTION (BACOVA_03322) from Bacteroides ovatus at 2.61 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.6 277 0.200000000M (NH4)2Tartrate, 20.000000000% PEG-3350, No Buffer pH 6.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.97 69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.073 α = 90 b = 124.073 β = 90 c = 66.888 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2010-04-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97937,0.97908 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.61 29.801 99.9 0.158 11.7 18340
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.61 29.801 18334 940 99.87 0.2 0.198 0.1891 0.236 0.219 RANDOM 51.264
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 0.42 0.83 -1.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.494 r_dihedral_angle_4_deg 17.688 r_dihedral_angle_3_deg 12.664 r_scangle_it 8.114 r_scbond_it 5.28 r_dihedral_angle_1_deg 5.14 r_mcangle_it 3.578 r_mcbond_it 1.868 r_angle_refined_deg 0.917 r_angle_other_deg 0.616
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.494 r_dihedral_angle_4_deg 17.688 r_dihedral_angle_3_deg 12.664 r_scangle_it 8.114 r_scbond_it 5.28 r_dihedral_angle_1_deg 5.14 r_mcangle_it 3.578 r_mcbond_it 1.868 r_angle_refined_deg 0.917 r_angle_other_deg 0.616 r_mcbond_other 0.325 r_chiral_restr 0.064 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2457 Nucleic Acid Atoms Solvent Atoms 79 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction