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Crystal structure of the phenanthroline-modified cytochrome cb562 variant, MBP-Phen2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 2.8 M sodium acetate, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.66 66.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.29 α = 90 b = 91.787 β = 107.99 c = 130.637 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2009-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.9794 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 124.248 99.3 0.055 17.2 4.4 65484 65484 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.01 2.12 99.7 0.237 0.237 1.7 4.4 9579
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.01 43.05 65981 65463 4750 99.21 0.2003 0.2003 0.1976 0.2003 0.235 0.2378 RANDOM 31.1747
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.463 r_dihedral_angle_3_deg 20.588 r_dihedral_angle_4_deg 18.721 r_scangle_it 6.903 r_dihedral_angle_1_deg 6.885 r_scbond_it 4.767 r_mcangle_it 3.074 r_mcbond_it 1.985 r_angle_refined_deg 0.985 r_chiral_restr 0.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.463 r_dihedral_angle_3_deg 20.588 r_dihedral_angle_4_deg 18.721 r_scangle_it 6.903 r_dihedral_angle_1_deg 6.885 r_scbond_it 4.767 r_mcangle_it 3.074 r_mcbond_it 1.985 r_angle_refined_deg 0.985 r_chiral_restr 0.082 r_gen_planes_refined 0.02 r_bond_refined_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4788 Nucleic Acid Atoms Solvent Atoms 285 Heterogen Atoms 386
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection MOSFLM data reduction