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Nucleotide Binding Domain of Human ABCB6 (ADP Mg bound structure)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3NH6 PDB ENTRY 3NH6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 0.1M MES pH 6.5, 40% (v/v) PEG400, 3mM ADP, 3mM Magnesium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.11 41.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.272 α = 90 b = 70.708 β = 90 c = 71.113 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR555 FLAT PANEL 2009-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.815 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 44.1 99.5 0.066 14.72 3.9 17131 17052 -3 39.685
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 97.9 2.4 3.2 1149
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3NH6 2.1 44.13 -3 17131 17052 853 100 0.187 0.184 0.1826 0.252 0.2477 RANDOM 35.366
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.17 1.08 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.433 r_dihedral_angle_4_deg 17.462 r_dihedral_angle_3_deg 15.714 r_dihedral_angle_1_deg 6.657 r_scangle_it 4.044 r_scbond_it 2.673 r_angle_refined_deg 1.619 r_mcangle_it 1.478 r_mcbond_it 0.862 r_chiral_restr 0.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.433 r_dihedral_angle_4_deg 17.462 r_dihedral_angle_3_deg 15.714 r_dihedral_angle_1_deg 6.657 r_scangle_it 4.044 r_scbond_it 2.673 r_angle_refined_deg 1.619 r_mcangle_it 1.478 r_mcbond_it 0.862 r_chiral_restr 0.108 r_bond_refined_d 0.018 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2111 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 41
Software Software Software Name Purpose XSCALE data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction AUTOMAR data collection XDS data reduction