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Crystal structure of Map Kinase from plasmodium berghei, PB000659.00.0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 25% glycerol, 20 % peg3350, 0.2 M di sodium tartrate, 2 mM ATP, 4 mM MgCl2, 2 mM TCEP, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.23 61.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.315 α = 90 b = 120.727 β = 90 c = 96.499 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD RIGAKU SATURN A200 2010-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 100 0.051 6.8 7.2 82850 82807 59.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.09 100 0.617 1.38 7 4064
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.05 32.17 82814 82732 4141 99.9 0.193 0.193 0.191 0.1871 0.229 0.2233 RANDOM 44.649
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.86 0.21 0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.16 r_dihedral_angle_4_deg 18.362 r_dihedral_angle_3_deg 14.364 r_dihedral_angle_1_deg 5.174 r_scangle_it 3.311 r_scbond_it 2.025 r_mcangle_it 1.541 r_angle_refined_deg 1.079 r_rigid_bond_restr 0.948 r_mcbond_it 0.838
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.16 r_dihedral_angle_4_deg 18.362 r_dihedral_angle_3_deg 14.364 r_dihedral_angle_1_deg 5.174 r_scangle_it 3.311 r_scbond_it 2.025 r_mcangle_it 1.541 r_angle_refined_deg 1.079 r_rigid_bond_restr 0.948 r_mcbond_it 0.838 r_chiral_restr 0.073 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6133 Nucleic Acid Atoms Solvent Atoms 506 Heterogen Atoms 42
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction