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Crystal Structure of the Complex between the 25 kDa Subunit and the 59 kDa Subunit (RRM domain) of Human Cleavage Factor Im
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CL3 PDB ENTRY 2CL3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.1M Tris-HCl pH 8.5, 20% ethanol, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.36 47.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 165.95 α = 90 b = 124.73 β = 90 c = 40.5 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97910 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 55.317 97.9 0.113 0.113 8 4.1 64843 63481 25.038
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.92 2.029 94 0.438 0.438 2.5 4 9250
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CL3 1.92 40.5 60194 3216 97.56 0.1978 0.19601 0.1967 0.23134 0.2283 RANDOM 26.266
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.28 -1.36 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.389 r_dihedral_angle_4_deg 18.202 r_dihedral_angle_3_deg 12.915 r_dihedral_angle_1_deg 6.111 r_scangle_it 3.717 r_scbond_it 2.259 r_mcangle_it 1.697 r_angle_refined_deg 1.418 r_mcbond_it 0.94 r_angle_other_deg 0.866
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.389 r_dihedral_angle_4_deg 18.202 r_dihedral_angle_3_deg 12.915 r_dihedral_angle_1_deg 6.111 r_scangle_it 3.717 r_scbond_it 2.259 r_mcangle_it 1.697 r_angle_refined_deg 1.418 r_mcbond_it 0.94 r_angle_other_deg 0.866 r_mcbond_other 0.212 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4763 Nucleic Acid Atoms Solvent Atoms 417 Heterogen Atoms 18
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement iMOSFLM data reduction SCALA data scaling