3N0M

Crystal structure of BA2930 mutant (H183G) in complex with AcCoA


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3KZL 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.52930.14 Molal MgCl2, 17% w/v PEG 3350, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2344.91

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.848α = 90
b = 110.613β = 90
c = 132.592γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210rMIRRORS2009-10-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BMAPS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.45097.50.0840.08423.13.921408-354.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.4496.60.5460.5462.13.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3KZL2.4502025620256109497.10.2150.2120.258RANDOM47.81
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.540.292.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.5
r_dihedral_angle_4_deg19.984
r_dihedral_angle_3_deg17.347
r_dihedral_angle_1_deg6.199
r_angle_other_deg4.15
r_scangle_it3.856
r_scbond_it2.685
r_angle_refined_deg1.649
r_mcangle_it1.369
r_mcbond_it0.741
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.5
r_dihedral_angle_4_deg19.984
r_dihedral_angle_3_deg17.347
r_dihedral_angle_1_deg6.199
r_angle_other_deg4.15
r_scangle_it3.856
r_scbond_it2.685
r_angle_refined_deg1.649
r_mcangle_it1.369
r_mcbond_it0.741
r_chiral_restr0.08
r_bond_refined_d0.017
r_gen_planes_refined0.008
r_gen_planes_other0.007
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4095
Nucleic Acid Atoms
Solvent Atoms43
Heterogen Atoms104

Software

Software
Software NamePurpose
HKL-3000data collection
HKL-3000phasing
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling