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Crystal structure of LptC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.04 M K2SO4, 16% PEG8000, 20% glycerol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.05 59.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.21 α = 90 b = 94.21 β = 90 c = 60.44 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315 2008-05-05 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9764 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 37 99 0.084 0.099 15.1 6.7 14286 14109 2 2.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.26 99.9 0.604 0.709 2.3 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 37 14286 13542 718 99.53 0.19606 0.19466 0.1926 0.22226 0.2193 RANDOM 43.628
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.83 -1.83 3.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.042 r_dihedral_angle_4_deg 24.667 r_dihedral_angle_3_deg 14.937 r_dihedral_angle_1_deg 6.28 r_scangle_it 6.036 r_scbond_it 3.849 r_mcangle_it 2.218 r_angle_refined_deg 2.056 r_mcbond_it 1.159 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.042 r_dihedral_angle_4_deg 24.667 r_dihedral_angle_3_deg 14.937 r_dihedral_angle_1_deg 6.28 r_scangle_it 6.036 r_scbond_it 3.849 r_mcangle_it 2.218 r_angle_refined_deg 2.056 r_mcbond_it 1.159 r_nbtor_refined 0.296 r_symmetry_vdw_refined 0.206 r_nbd_refined 0.186 r_chiral_restr 0.151 r_xyhbond_nbd_refined 0.139 r_symmetry_hbond_refined 0.108 r_bond_refined_d 0.025 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1018 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SOLVE phasing REFMAC refinement SCALA data scaling