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Crystal Structure of the TK3-Gln55His TCR in complex with HLA-B*3501/HPVG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 277 15%PEG 3350, 0.2M LiSO4, 0.1M Na-citrate, pH 5.6, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.35 47.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.76 α = 101.12 b = 63.61 β = 97.6 c = 88.14 γ = 112
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2009-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.979457 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 100 98.2 0.097 11.4 49428 -3 30.885
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.2 97.3 0.477 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION 2fyy, 3ffc THROUGHOUT 2.1 84.22 49426 2513 98.24 0.231 0.229 0.2428 0.276 0.2828 RANDOM 30.518
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.37 0.59 -1.28 0.61 1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.811 r_dihedral_angle_3_deg 16.468 r_dihedral_angle_4_deg 13.701 r_dihedral_angle_1_deg 5.925 r_scangle_it 1.09 r_angle_refined_deg 1.046 r_scbond_it 0.656 r_mcangle_it 0.469 r_mcbond_it 0.244 r_chiral_restr 0.073
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.811 r_dihedral_angle_3_deg 16.468 r_dihedral_angle_4_deg 13.701 r_dihedral_angle_1_deg 5.925 r_scangle_it 1.09 r_angle_refined_deg 1.046 r_scbond_it 0.656 r_mcangle_it 0.469 r_mcbond_it 0.244 r_chiral_restr 0.073 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6672 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 5
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction