☰ Navigation Tabs
2A Resolution Structure of Rat Type B Cytochrome b5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AWP PDB ENTRY 1AWP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 277 30%PEG8K, 0.2M MgAc, 0.1M Hepes, pH 6.8, EVAPORATION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.83 59.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.26 α = 90 b = 71.13 β = 90 c = 72.8 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 297 DIFFRACTOMETER SIEMENS FOUR-CIRCLE GRAPHITE MONOCHROMATOR 1997-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 10.3 97 0.063 14715 -3 23
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1AWP 2 10 16822 14596 1507 86.8 0.176 0.176 0.1686 0.223 0.2136 RANDOM 30.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -12.211 5.822 6.39
RMS Deviations Key Refinement Restraint Deviation c_mcangle_it 2.07 c_angle_deg 1.58 c_mcbond_it 1.22 c_bond_d 0.017 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation c_mcangle_it 2.07 c_angle_deg 1.58 c_mcbond_it 1.22 c_bond_d 0.017 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot c_scbond_it c_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1380 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms 86
Software Software Software Name Purpose SAINT data scaling AMoRE phasing CNS refinement SAINT data reduction SCALA data scaling