Experiment: 3MQL

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2CG7	INDIVIDUAL DOMAINS FROM PDB ENTRIES 2CG7, 2RKY, 3EJH, 1EAK, 1H8P, 1L6J
experimental model	PDB	2RKY	INDIVIDUAL DOMAINS FROM PDB ENTRIES 2CG7, 2RKY, 3EJH, 1EAK, 1H8P, 1L6J
experimental model	PDB	3EJH	INDIVIDUAL DOMAINS FROM PDB ENTRIES 2CG7, 2RKY, 3EJH, 1EAK, 1H8P, 1L6J
experimental model	PDB	1EAK	INDIVIDUAL DOMAINS FROM PDB ENTRIES 2CG7, 2RKY, 3EJH, 1EAK, 1H8P, 1L6J
experimental model	PDB	1H8P	INDIVIDUAL DOMAINS FROM PDB ENTRIES 2CG7, 2RKY, 3EJH, 1EAK, 1H8P, 1L6J
experimental model	PDB	1L6J	INDIVIDUAL DOMAINS FROM PDB ENTRIES 2CG7, 2RKY, 3EJH, 1EAK, 1H8P, 1L6J

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7	293	1:1 drops of of protein in 100 mM NaCl, 10mM HEPES pH 7.2 buffer at 17.5 mg/ml concentration, and a 0.2 M (NH4)H2PO4, 0.1 M Tris-Cl pH 8.5, 50% MPD buffer, VAPOR DIFFUSION, SITTING DROP, temperature 293K

Crystal Properties
Matthews coefficient	Solvent content
2.77	55.62

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 103.947	α = 90
b = 103.947	β = 90
c = 102.143	γ = 90

Symmetry
Space Group	I 41 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 225 mm CCD		2010-02-05	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.004	51.974	99.7	0.055	27	7.1		5835

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	3	3.17	98.6		0.473	0.473	1.7	7.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Starting model	Resolution (High)	Resolution (Low)	Cut-off Sigma (F)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	INDIVIDUAL DOMAINS FROM PDB ENTRIES 2CG7, 2RKY, 3EJH, 1EAK, 1H8P, 1L6J	3.004	51.973	1.4	5835	528	99.52	0.2026	0.2012	0.2305

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
4.583			4.583		-9.166

RMS Deviations
Key	Refinement Restraint Deviation
f_dihedral_angle_d	14.039
f_angle_d	0.776
f_chiral_restr	0.054
f_bond_d	0.004
f_plane_restr	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1632
Nucleic Acid Atoms
Solvent Atoms	2
Heterogen Atoms	38

Software

Software
Software Name	Purpose
MAR345dtb	data collection
PHASER	phasing
PHENIX	refinement
XSCALE	data scaling
SCALA	data scaling

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.