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Structure of EUTL in the zinc-induced open form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GFH PDB entry 3GFH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 2 M NaCl, 100 mM phosphate, 100 mM MES buffer, 5 % PEG 400, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.21 44.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.415 α = 90 b = 67.415 β = 90 c = 79.604 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Si III mirror 2009-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.979464 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 58.43 98.9 0.117 1.9 2.8 11274
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3GFH 2.6 58.38 11250 972 98.39 0.22523 0.22176 0.2301 0.26672 RANDOM 34.034
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -34.58 -34.58 69.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.957 r_dihedral_angle_3_deg 22.78 r_dihedral_angle_4_deg 21.345 r_dihedral_angle_1_deg 7.937 r_scangle_it 3.633 r_scbond_it 2.23 r_angle_refined_deg 2.171 r_mcangle_it 1.48 r_angle_other_deg 0.866 r_mcbond_it 0.808
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.957 r_dihedral_angle_3_deg 22.78 r_dihedral_angle_4_deg 21.345 r_dihedral_angle_1_deg 7.937 r_scangle_it 3.633 r_scbond_it 2.23 r_angle_refined_deg 2.171 r_mcangle_it 1.48 r_angle_other_deg 0.866 r_mcbond_it 0.808 r_mcbond_other 0.144 r_chiral_restr 0.111 r_bond_refined_d 0.023 r_gen_planes_refined 0.015 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2942 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 9
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling