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The crystal structure of a Fn3-like protein from Clostridium thermocellum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 1.6 M ammonium sulphate, 0.1 M MES monohydrate, 10% v/v 1,4-dioxane, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.01 38.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.428 α = 90 b = 45.731 β = 90 c = 107.715 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 Helios 2008-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 53.86 96.8 0.043 24.87 5.12 23168 23168
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.65 94.8 0.1407 7.16 2.36 1580
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.6 25 21257 21257 1150 93.85 0.16743 0.16743 0.16582 0.1732 0.19624 0.199 RANDOM 9.366
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.26 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.994 r_dihedral_angle_4_deg 24.949 r_dihedral_angle_3_deg 13.387 r_dihedral_angle_1_deg 8.095 r_scangle_it 4.518 r_scbond_it 2.938 r_mcangle_it 2.5 r_angle_refined_deg 1.98 r_mcbond_it 1.585 r_angle_other_deg 1.015
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.994 r_dihedral_angle_4_deg 24.949 r_dihedral_angle_3_deg 13.387 r_dihedral_angle_1_deg 8.095 r_scangle_it 4.518 r_scbond_it 2.938 r_mcangle_it 2.5 r_angle_refined_deg 1.98 r_mcbond_it 1.585 r_angle_other_deg 1.015 r_mcbond_other 0.587 r_chiral_restr 0.131 r_bond_refined_d 0.023 r_gen_planes_refined 0.013 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1404 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 5
Software Software Software Name Purpose PROTEUM PLUS data collection SHELXS phasing REFMAC refinement SAINT data reduction PROTEUM PLUS data scaling