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Crystal structure of SGF29 in complex with H3K4me3 peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 25% PEG3350, 0.1M ammonium sulfate, 0.1M Bis-Tris, pH 5.5, vapor diffusion, sitting drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.2 38.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.038 α = 90 b = 65.434 β = 90 c = 105.619 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-10-15 M SINGLE WAVELENGTH 2 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 2009-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97927 APS 19-ID 2 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.37 20 100 0.08 6.7 7.1 73960
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.37 1.39 100 0.972 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.37 20 73591 2001 99.995 0.19167 0.19105 0.2012 0.21353 0.2191 RANDOM 11.704
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.317 -0.372 0.056
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.565 r_dihedral_angle_4_deg 20.335 r_dihedral_angle_3_deg 12.679 r_dihedral_angle_1_deg 7.731 r_scangle_it 3.695 r_scbond_it 2.564 r_mcangle_it 1.645 r_angle_refined_deg 1.563 r_mcbond_it 0.942 r_angle_other_deg 0.913
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.565 r_dihedral_angle_4_deg 20.335 r_dihedral_angle_3_deg 12.679 r_dihedral_angle_1_deg 7.731 r_scangle_it 3.695 r_scbond_it 2.564 r_mcangle_it 1.645 r_angle_refined_deg 1.563 r_mcbond_it 0.942 r_angle_other_deg 0.913 r_mcbond_other 0.271 r_chiral_restr 0.095 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2822 Nucleic Acid Atoms Solvent Atoms 302 Heterogen Atoms 27
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction HKL-3000 data scaling