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Structure of the Dom34-Hbs1 Complex and implications for its role in No-Go decay
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 6% PEG 8000, 0.1M HEPES, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.46 49.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.741 α = 90 b = 113.423 β = 90 c = 124.742 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2009-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9798 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 83.919 99.9 0.069 0.084 0.03 18.7 7.9 34234 34234
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.64 100 0.933 0.933 1.065 0.37 0.8 8.1 1702
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.74 20 29175 1460 99.9 0.2486 0.2467 0.2517 0.286 0.292 RANDOM 66.9494
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.72 0.87 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.67 r_dihedral_angle_3_deg 22.287 r_dihedral_angle_4_deg 20.478 r_dihedral_angle_1_deg 7.892 r_scangle_it 1.933 r_angle_refined_deg 1.493 r_scbond_it 1.106 r_mcangle_it 0.819 r_mcbond_it 0.432 r_chiral_restr 0.104
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.67 r_dihedral_angle_3_deg 22.287 r_dihedral_angle_4_deg 20.478 r_dihedral_angle_1_deg 7.892 r_scangle_it 1.933 r_angle_refined_deg 1.493 r_scbond_it 1.106 r_mcangle_it 0.819 r_mcbond_it 0.432 r_chiral_restr 0.104 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5685 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction REFMAC refinement PDB_EXTRACT data extraction SCALA data scaling